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整合Hi-C和ChIP-seq数据分析

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licheng 发表于 2016-1-8 00:04:15 | 显示全部楼层 |阅读模式
Predicting chromatin organization using histone marks.
Huang J, Marco E, Pinello L, Yuan GC.
Genome Biol. 2015 Aug 14;16(1):162.

Integrative modeling reveals the principles of multi-scale chromatin boundary formation in human nuclear organization.
Moore BL, Aitken S, Semple CA.
Genome Biol. 2015 May 27;16:110.

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.
Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX.
Nucleic Acids Res. 2012 Sep;40(16):7690-704. Epub 2012 Jun 6.

CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization.
Ziebarth JD, Bhattacharya A, Cui Y.
Nucleic Acids Res. 2013 Jan;41(Database issue): D188-94.

Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide.
Botta M, Haider S, Leung IX, Lio P, Mozziconacci J.
Mol Syst Biol. 2010 Nov 2;6:426.

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