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数据资源:HI-C数据浏览器和UCSC基因组浏览器

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licheng 发表于 2015-12-23 01:09:54 | 显示全部楼层 |阅读模式
From: Cheng Li
Date: Fri, Jan 9, 2015 at 6:13 PM
Subject: 数据资源

Hi-C data browser
Science 2009: http://hic.umassmed.edu/heatmap/heatmap.php

Cell 2014: http://www.aidenlab.org/juicebox/

Ren Lab: http://yuelab.org/hi-c/tutorial.html

My5C: http://www.nature.com/nmeth/journal/v6/n10/full/nmeth1009-690.html

The 3DGD: a database of genome 3D structure. Bioinformatics. 2014 Jun 1;30(11):1640-2.


UCSC genome browser
The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 2014 Nov 26.
The UCSC Genome Browser database: 2014 update. Nucleic Acids Res. 2014 Jan;42(Database issue)764-70.
The UCSC Cancer Genomics Browser: update 2015. Nucleic Acids Res. 2014 Nov 11.
The UCSC Interaction Browser: multidimensional data views in pathway context.Nucleic Acids Res. 2013 Jul;41(Web Server issue):W218-24.
The UCSC genome browser and associated tools. Brief Bioinform. 2013 Mar;14(2):144-61.
ENCODE data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res. 2013 Jan;41(Database issue)56-63.

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.Nucleic Acids Res. 2012 Jan;40(Database issue)912-7.


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