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【文献】干细胞与单细胞测序

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licheng 发表于 2016-4-7 19:17:38 | 显示全部楼层 |阅读模式
http://www.ncbi.nlm.nih.gov/pubmed/27281220
Nature. 2016 Jun 8. doi: 10.1038/nature18323. [Epub ahead of print]
Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.

http://www.ncbi.nlm.nih.gov/pubmed/27062923
Cell. 2016 May 5;165(4):1012-26. doi: 10.1016/j.cell.2016.03.023. Epub 2016 Apr 7.
Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos.

http://www.ncbi.nlm.nih.gov/pubmed/26804912
Cell Rep. 2016 Feb 2;14(4):966-77.
Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells.

http://www.ncbi.nlm.nih.gov/pubmed/26804902
Cell Rep. 2016 Feb 2;14(4):956-65. doi: 10.1016/j.celrep.2015.12.089. Epub 2016 Jan 21.
Serum-Based Culture Conditions Provoke Gene Expression Variability in Mouse Embryonic Stem Cells as Revealed by Single-Cell Analysis.

http://www.ncbi.nlm.nih.gov/pubmed/26687353
Cell. 2015 Dec 17;163(7):1596-610. doi: 10.1016/j.cell.2015.11.018.
Control of Transcript Variability in Single Mammalian Cells.
  • Mathematical modeling and experimental validation show that nuclear retention and transport of transcripts between the nucleus and the cytoplasm is central to buffering stochastic transcriptional fluctuations in mammalian gene expression.


http://www.ncbi.nlm.nih.gov/pubmed/26544934
Cell. 2015 Nov 5;163(4):799-810.
Design and Analysis of Single-Cell Sequencing Experiments.

http://www.ncbi.nlm.nih.gov/pubmed/26431182
Cell Stem Cell. 2015 Oct 1;17(4):471-85.
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation.

http://www.ncbi.nlm.nih.gov/pubmed/26235341
Cell Stem Cell. 2015 Sep 3;17(3):329-40
Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury.

http://www.ncbi.nlm.nih.gov/pubmed/26299571
Cell Stem Cell. 2015 Sep 3;17(3):360-72. doi: 10.1016/j.stem.2015.07.013. Epub 2015 Aug 20.
Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.

http://www.ncbi.nlm.nih.gov/pubmed/26051941
Cell Rep. 2015 Jun 16;11(10):1503-10.
Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.

http://www.ncbi.nlm.nih.gov/pubmed/26046443
Cell. 2015 Jun 4;161(6):1437-52. doi: 10.1016/j.cell.2015.05.015.
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells.

http://www.ncbi.nlm.nih.gov/pubmed/26004780
Cell Stem Cell. 2015 Jun 4;16(6):712-24. doi: 10.1016/j.stem.2015.04.004. Epub 2015 May 21.
Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations.

http://www.ncbi.nlm.nih.gov/pubmed/26000487
Cell. 2015 May 21;161(5):1187-201. doi: 10.1016/j.cell.2015.04.044.
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

http://www.ncbi.nlm.nih.gov/pubmed/26000846
Mol Cell. 2015 May 21;58(4):610-20.
The technology and biology of single-cell RNA sequencing.

http://www.ncbi.nlm.nih.gov/pubmed/26000845
Mol Cell. 2015 May 21;58(4):598-609
Advances and applications of single-cell sequencing technologies.

http://www.ncbi.nlm.nih.gov/pubmed/25748935
Cell Stem Cell. 2015 Mar 5;16(3):323-37. doi: 10.1016/j.stem.2015.01.015.
A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry.

http://www.ncbi.nlm.nih.gov/pubmed/25732828
Cell Rep. 2015 Mar 3;10(8):1386-97. doi: 10.1016/j.celrep.2015.02.001. Epub 2015 Feb 26.
Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics.

http://www.ncbi.nlm.nih.gov/pubmed/25575081
Cell Stem Cell. 2015 Jan 8;16(1):88-101.
Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.

http://www.ncbi.nlm.nih.gov/pubmed/25471879
Nature. 2014 Dec 4;516(7529):56-61. doi: 10.1038/nature13920.
Deconstructing transcriptional heterogeneity in pluripotent stem cells.

http://www.ncbi.nlm.nih.gov/pubmed/25517464
Cell Stem Cell. 2014 Nov 6;15(5):546-58. doi: 10.1016/j.stem.2014.10.015. Epub 2014 Nov 6.
Quantitative single-cell approaches to stem cell research.

http://www.ncbi.nlm.nih.gov/pubmed/25038413
Mol Cell. 2014 Jul 17;55(2):319-31. doi: 10.1016/j.molcel.2014.06.029.
Dynamic heterogeneity and DNA methylation in embryonic stem cells.

http://www.ncbi.nlm.nih.gov/pubmed/24768691
Cell. 2014 May 8;157(4):964-78. doi: 10.1016/j.cell.2014.03.036. Epub 2014 Apr 24.
Reconstruction of the mouse otocyst and early neuroblast lineage at single-cell resolution.

http://www.ncbi.nlm.nih.gov/pubmed/24739965
Nature. 2014 May 15;509(7500):371-5.
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.

http://www.ncbi.nlm.nih.gov/pubmed/23892778
Nature. 2013 Aug 29;500(7464):593-7.
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.

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Czh3 发表于 2016-4-21 12:21:35 | 显示全部楼层
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Microfluidic single-cell whole-transcriptome sequencing.pdf

1.25 MB, 下载次数: 631

Normalization and noise reduction for single cell RNA-seq experiments.pdf

164.74 KB, 下载次数: 579

Quantitative assessment of single-cell RNA-sequencing methods.pdf

943.71 KB, 下载次数: 541

2013 Nature Structure Single-cell RNA-Seq profiling of human preimplantation emb.pdf

1.24 MB, 下载次数: 690

Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mamma.pdf

385.07 KB, 下载次数: 500

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