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【文献】干细胞与3D基因组

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licheng 发表于 2016-3-21 19:46:56 | 显示全部楼层 |阅读模式
干细胞3D基因组综述
http://www.ncbi.nlm.nih.gov/pubmed/24905166
Cell Stem Cell. 2014 Jun 5;14(6):762-75. doi: 10.1016/j.stem.2014.05.017.
The 3D genome in transcriptional regulation and pluripotency.

http://www.ncbi.nlm.nih.gov/pubmed/25957773
FEBS Lett. 2015 Oct 7;589(20 Pt A):2905-13. doi: 10.1016/j.febslet.2015.04.055. Epub 2015 May 7.
Architectural hallmarks of the pluripotent genome.

http://www.ncbi.nlm.nih.gov/pubmed/23199754
Curr Opin Cell Biol. 2012 Dec;24(6):793-801. doi: 10.1016/j.ceb.2012.11.001. Epub 2012 Nov 27. Pluripotency in 3D: genome organization in pluripotent cells.

干细胞3D基因组
http://www.ncbi.nlm.nih.gov/pubmed/23883933Nature. 2013 Sep 12;501(7466):227-31. doi: 10.1038/nature12420. Epub 2013 Jul 24.
The pluripotent genome in three dimensions is shaped around pluripotency factors.

干细胞的naive和primed states
http://www.ncbi.nlm.nih.gov/pubmed/26637943
Cell Stem Cell. 2015 Dec 3;17(6):748-57. doi: 10.1016/j.stem.2015.11.010.
Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency.

http://www.ncbi.nlm.nih.gov/pubmed/26235340
Cell Stem Cell. 2015 Oct 1;17(4):462-70. doi: 10.1016/j.stem.2015.07.005. Epub 2015 Jul 30.
Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming.

http://www.ncbi.nlm.nih.gov/pubmed/24905169
Cell Stem Cell. 2014 Jun 5;14(6):854-63. doi: 10.1016/j.stem.2014.05.005.
Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency.

http://www.ncbi.nlm.nih.gov/pubmed/25280217
Cell Stem Cell. 2014 Oct 2;15(4):410-5. doi: 10.1016/j.stem.2014.09.014.
The naive state of human pluripotent stem cells: a synthesis of stem cell and preimplantation embryo transcriptome analyses.

http://www.ncbi.nlm.nih.gov/pubmed/25303531
Cell. 2014 Oct 9;159(2):374-87. doi: 10.1016/j.cell.2014.09.030.
Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.

http://www.ncbi.nlm.nih.gov/pubmed/26686465
Cell Stem Cell. 2016 Feb 4;18(2):262-75. doi: 10.1016/j.stem.2015.11.007. Epub 2015 Dec 10.
3D Chromosome Regulatory Landscape of Human Pluripotent Cells.

http://www.ncbi.nlm.nih.gov/pubmed/26860365
Nat Rev Mol Cell Biol. 2016 Mar;17(3):155-69. doi: 10.1038/nrm.2015.28. Epub 2016 Feb 10.
Dynamic stem cell states: naive to primed pluripotency in rodents and humans.

分化与重编程
http://www.ncbi.nlm.nih.gov/pubmed/25693564
Nature. 2015 Feb 19;518(7539):331-6. doi: 10.1038/nature14222.
Chromatin architecture reorganization during stem cell differentiation.

http://www.ncbi.nlm.nih.gov/pubmed/26971819
Cell Stem Cell. 2016 Mar 8. pii: S1934-5909(16)00008-4. doi: 10.1016/j.stem.2016.01.007. [Epub ahead of print]
Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming.





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